Package: asymLD 0.1
asymLD: Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data
Computes asymmetric LD measures (ALD) for multi-allelic genetic data. These measures are identical to the correlation measure (r) for bi-allelic data.
Authors:
asymLD_0.1.tar.gz
asymLD_0.1.zip(r-4.5)asymLD_0.1.zip(r-4.4)asymLD_0.1.zip(r-4.3)
asymLD_0.1.tgz(r-4.4-any)asymLD_0.1.tgz(r-4.3-any)
asymLD_0.1.tar.gz(r-4.5-noble)asymLD_0.1.tar.gz(r-4.4-noble)
asymLD_0.1.tgz(r-4.4-emscripten)asymLD_0.1.tgz(r-4.3-emscripten)
asymLD.pdf |asymLD.html✨
asymLD/json (API)
| # Install 'asymLD' in R: |
| install.packages('asymLD', repos = c('https://rsingle.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 9 years agofrom:d6d57c7026. Checks:OK: 5 ERROR: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 15 2024 |
| R-4.5-win | OK | Sep 15 2024 |
| R-4.5-linux | OK | Sep 15 2024 |
| R-4.4-win | OK | Sep 15 2024 |
| R-4.4-mac | OK | Sep 15 2024 |
| R-4.3-win | ERROR | Sep 15 2024 |
| R-4.3-mac | ERROR | Sep 15 2024 |
Exports:compute.ALDcompute.AShomzlsort
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| asymLD: a package for computing asymmetric Linkage Disequilibrium (ALD) between two polymorphic genetic loci | asymLD-package asymLD |
| Compute ALD. | compute.ALD |
| Compute allele specific homozygosity. | compute.AShomz |
| Pairwise haplotype frequencies for 7 HLA loci | hla.freqs |
| Sort a data.frame. | lsort |
| Pairwise haplotype frequencies for 4 SNP loci | snp.freqs |
